Fix lint errors and bump golangci-lint to v2/action v9

- Migrate .golangci.yml to golangci-lint v2 config format
- Bump golangci-lint-action from v6 (Node 20, deprecated) to v9 (Node 24)
- Fix errcheck: check fmt.Fscanln and fmt.Sscanf return values
- Fix ineffassign: replace unused vars with _ in test files
- Fix revive unused-parameter: rename unused cmd/args/r/c params to _
- Fix revive empty-block: invert if condition in push command
- Fix revive redefines-builtin-id: rename 'clear' to 'clearsigned'
- Fix revive blank-imports: add comment on modernc.org/sqlite import
- Fix unused: remove unused 'suite' and 'gen' fields from cache entry

server/cache/cache.go

@@ -19,8 +19,6 @@ type IndexCache struct {
 
 type entry struct {
 	indices *apt.Indices
-	suite   *apt.Suite
-	gen     int64
 	dirty   bool
 }